42. “Hg (II)-mediated intramolecular cyclization of alkynyl hydrazones: Towards a new reaction-based sensing approach for Hg(II)”, Buse Tütüncü, Miray Cebeci, Mustafa Emrullahoğlu*, Chemistry-An Asian Journal, (Wiley), 2022, https://doi.org/10.1002/asia.202200273

41. “A Cyclopalladated BODIPY Construct as a Fluorescent Probe for Carbon Monoxide (CO)”, Merve Cevik Eren, Ahmet Eren, Suay Dartar, Buse Tütüncü, Mustafa  Emrullahoğlu*, European Journal of Inorganic Chemistry, (Wiley), 2022, https://doi.org/10.1002/ejic.202200093

Dedicated to the memory of Prof. Dr. Ayhan S. Demir (1950–2012)



40. “BODIPY–vinyl dibromides as triplet sensitisers for photodynamic therapy and triplet-triplet annihilation upconversion”, hammed Üçüncü, Erman Karakus, Yuqi Hou, Jianzhang Zhao*, Mustafa Emrullahoğlu*; Chem. Commun, 2021, DOI: 10.1039/D1CC01881G



39. “Electrical, photodiode, and DFT studies of newly synthesized π-conjugated BODIPY dye-based Au/BOD-Dim/n-Si device”, Muhammet Ferit Şahin, Enis Taşcı, Mustafa Emrullahoğlu, Halil Gökce, Nihat Tuğluoğlu, Serkan Eymur; Physica B: Condensed Matter, 2021, DOI: 10.1016/j.physb.2021.413029 

38. “Investigation of electrical and photovoltaic properties of Au/n-Si Schottky diode with BOD-Z-EN interlayer”, Ali Osman Tezcan,  Serkan Eymur, Enis Taşcı, Mustafa Emrullahoğlu & Nihat Tuğluoğlu; Journal of Materials Science: Materials in Electronics, 2021, 12513–12520, DOI: 10.1007/s10854-021-05886-7

37. “A new fluorescent ‘turn on’ probe for rapid detection of biothiols”, Muhammed Üçüncü, Hüseyin Zeybek, Erman Karakuş, Canan Üçüncü& Mustafa Emrullahoğlu*; Supramolecular Chemistry, 2021, 32:12, 634-641, DOI: 10.1080/10610278.2021.1893321

36.“Fabrication, illumination dependent electrical and photovoltaic properties of Au/BOD-Pyr/n-Si/In Schottky diode”, Onur Ongun, Enis Taşcı, Mustafa Emrullahoğlu, Ümmühan Akın, Nihat Tuğluoğlu, Serkan Eymur*; DOI: 10.21203/rs.3.rs-173216/v1


35. “BODIPY-based organic color conversion layers for WLEDs”, Hurriyet Yuce, Tugrul Guner, Suay DartarBeraat U.Kaya, MustafaEmrullahoglu , Mustafa M.Demir; Dyes and Pigments, 2021, 107932, DOI: 10.1016/j.dyepig.2019.107932


34. “Fluorescein propiolate: a propiolate-decorated fluorescent probe with remarkable selectivity towards cysteine”, Erman KarakuşMelike Sayar Suay Dartar Beraat Umur Kaya and Mustafa Emrullahoğlu*; Chem. Commun., 201955, 4937-4940, DOI:  10.1039/C9CC01774G 



33. “A BODIPY-based fluorescent probe to visually detect phosgene: Toward the development of a handheld phosgene detector”, Melike Sayar, Erman Karakuş, Tuğrul Güner, Büşra Yıldız, Umit Hakan Yıldız, Mustafa Emrullahoglu* Chemistry– A European Journal, 2018, DOI: 10.1002/chem.201705613


32. “Determination of force-free wet adhesion of mussel-inspired polymers to spin labeled surface” Kirpat, Iklima; Goksel, Yaman; Karakus, Erman; Emrullahoglu, Mustafa; Akdogan, Yasar*; Materials Letter, 2017, 205, 48-51 DOI: 10.1016/j.matlet.2017.06.060

31. “BODIPYAu(I): A Photosensitizer for Singlet Oxygen Generation and Photodynamic Therapy”; Muhammed Üçüncü, Erman Karakuş, Eylem Kurulgan Demirci, Melike Sayar, Suay Dartar, and Mustafa Emrullahoğlu*; Organic Letters 2017; DOI: 10.1021/acs.orglett.7b00791


30. “Bodipy-conjugated chitosan nanoparticles as a fluorescent probe”; Gizem Bor, Muhammed Üçüncü, Mustafa Emrullahoğlu, Aysel Tomak, Gülşah Şanlı-Mohamed; Drug and Chemical Toxicology, 2016, 1-8. DOI: 10.1080/01480545.2016.1238481

29. “EPR studies of intermolecular interactions and competitive binding of drugs in a drug-BSA binding model”; Yasar Akdogan*, Mustafa Emrullahoğlu, Duygu Tatlidil, Muhammed Ucuncu and Gulcin Cakan-Akdogan; Phys. Chem. Chem. Phys. 2016, 18, 22531; DOI: 10.1039/C6CP04137J

28. “A Rare γ-Pyranopyrazole Skeleton:Design, One-Pot Synthesis and Computational study” Muhammed Üçüncü, Ceren Cantürk, Erman Karakuş, Hüseyin Zeybek, Uğur Bozkaya, Emine Soydaş, Ertan Şahin and Mustafa Emrullahoğlu*, Org.Biomol.Chem.,2016, 14, 7490; DOI10.1039/C6OB01099G

27. “A Bodipy-based fluorescent probe for ratiometric detection of gold ions: Utilization of Z-enynol as the reactive unit”, Muhammed Üçüncü, Erman Karakuş, Mustafa Emrullahoğlu*; Chem Commun., 2016, 52, 8247; DOI: 10.1039/C6CC04100K.

26. “Rhodamine-Immobilised Electrospun Chitosan Nanofibrous Material as a Fluorescence Turn-On Hg2+ Sensor”, Nesrin Horzum,Derya Mete, Erman Karakuş, Muhammed Ücüncü, Mustafa Emrullahoğlu*, and Mustafa M. Demir*, ChemistrySelect2016, 4, 1–6. DOI: 10.1002/slct.201600027

25. “A Fluorescein-Based Chemodosimeter for Selective Gold(III) Ion Monitoring in Aqueous Media and Living Systems” Ceyla Çetintaş, Erman Karakuş, Muhammed Üçüncü and Mustafa Emrullahoğlu*, Sensors and Actuators B: Chemical, 2016, 234, 109; DOI_10.1016/j.snb.2016.04.158

24. “An electrophilic cyanate as a recognition motif for reactive sulphur species: selective fluorescence detection of H2S”, Erman Karakuş, Muhammed Üçüncü, Mustafa Emrullahoğlu*, Analytical Chemistry, 2016, DOI: 10.1021/acs.analchem.5b04163


23. “A BODIPY/Pyridine conjugate for reversible fluorescence detection of gold(III) ions” Muhammed Üçüncü, Erman Karakuş, Mustafa Emrullahoğlu*; New J. Chem2015, 39, 8337 DOI: 10.1039/C5NJ01664A

22. “A Ratiometric Fluorescent Probe for Gold and Mercury Ions” Muhammed Üçüncü, Erman Karakuş, Mustafa Emrullahoğlu*, Chem. Eur. J, 2015, 21,13201; DOI:10.1002/chem.201502411

21. “A guanidinium modified Rhodamine-based fluorescent probe for in vitro/vivo imaging of gold ions” Erman Karakuş, Gülçin Çakan Akdoğan and Mustafa Emrullahoğlu*, Analytical Methods, 2015, 7, 8004 DOI: 10.1039/C5AY01581B

20.  “A BODIPY-based fluorescent probe for the differential recognition of Hg(II) and Au(III) ions” Ceren Cantürk, Muhammed Üçüncü and Mustafa Emrullahoğlu*, RSC Adv.,2015, 5, 30522; DOI: 10.1039/c5ra04015a


19. “A BODIPY-based reactive probe for the detection of Au(III) species and its application to cell imaging”, Muhammed Üçüncü and Mustafa Emrullahoğlu*; Chem. Commun., 2014, 50, 5884  DOI:10.1039/C4CC01958J.

18. “A Rhodamine/Bodipy-Based Fluorescent Probe for the Differential Detection of Hg(II) and Au(III)”, Mustafa Emrullahoğlu*, Erman Karakuş and Muhammed Üçüncü ; Chem. Commun., 2014, 10,1039  DOI: 10.1039/C3CC48436J

17. “A New Proton-Sponge Polymer Synthesized by RAFT Polymerization for Intracellular Delivery of Biotherapeutics”, Isil Kurtulus, Gokhan Yilmaz, Muhammed Üçüncü, Mustafa Emrullahoğlu, Remzi Becer and Volga Bulmus; Polymer. Chem. 2014, 5, 1593 DOI:10.1039/C3PY01244A


16. “A rhodamine based “turn-on” chemodosimeter for monitoring gold ions in synthetic samples and living cells”, Mustafa Emrullahoğlu*, Erman Karakuş and Muhammed Üçüncü; Analyst, 2013, 138, 3638 DOI 10.1039/C3AN00024A

15. “A BODIPY aldoxime-based chemodosimeter for highly selective and rapid detection of hypochlorous acid”, Mustafa Emrullahoğlu*, Muhammed Üçüncü and Erman Karakuş; Chem. Commun., 2013, 49, 7836-7838; DOI: 10.1039/C3CC44463E, 

14. “The utilization of pH sensitive spirocyclic rhodamine dyes for monitoring D-fructose consumption during a fermentation process”, Erman Karakuş, Muhammed Üçüncü, Ritchie C. Eanes and Mustafa Emrullahoğlu; New J. Chem., 2013, 37, 2632-2635; DOI: 10.1039/C3NJ00613A

13. “Sol-gel Approaches for Elaboration of Polyol Dehydrogenase-Based Bioelectrodes” Urbanova, V.; Kohring, G-H.; Klein, T.; Wang, Z.; Mert, O.; Mustafa Emrullahoğlu; Buran,K.; Demir, A. S.; Etienne, M.; and Walcarius; Z. Phys. Chem., 2013, DOI 10.1524/zpch.2013.0324

Before 2013

12. “Reactions of acylphosphonates with organoaluminum reagents: a new method for the synthesis of secondary and tertiary α-hydroxyphosphonates”; Seven, Ö.; Cak, S.; Hossain, S.; Emrullahoğlu, M.; Demir, A. S. Tetrahedron, 2011, 67, 3464.

11. “Gold(I)/Zn(II) catalyzed tandem hydroamination/annulationreaction of 4-yne-nitriles”; Demir, A. S.; Emrullahoğlu, M.; Buran, K. Chem. Comm. 2010, 46, 8032.

10. “Targeted LipoCest Constrast Agents for MRI: Alignment of Aspherical Liposomes on a Capillary Surface”; Burdinski, D.;Pikkemaat, J.; Emrullahoğlu, M.; Constantini, F.; Verboom, W.; Langereis, S.; Grüll, H.; Huskens, J. Angew. Chem.,Int. Ed. Engl., 2010, 49, 2227.

9. “Cyanide ion promoted addition of acylphosphonates to diethylcyanophosphonates: Synthesis of Phosphonocyanohydrin O-phosphonates”, Demir, A. S.; Aybey, A.; Emrullahoğlu, M. Synthesis, 2009, 10, 1655.

8. ”Darzens Reaction of Acyl Phosphonates with alpha-Bromo Ketones: Selective Synthesis of cis-and trans- Epoxyphosphonates, Demir, A. S.; Emrullahoğlu, M.; Pirkin, E. Akca, N. J. Org. Chem., 2008, 73, 8992.  

7. “Manganese(III) acetate: A versatile reagent in organic chemistry”; Demir, A. S.; Emrullahoğlu, M. Current Organic Synthesis, 2007, 4, 321.

6. “New approaches to poly substituted pyrroles and pyrrolinones from α-cyanomethyl-β-ketoesters”; Demir, A. S.; Emrullahoğlu, M.; Ardahan, G. Tetrahedron, 2007, 63, 461.

5. “Zinc perchlorate catalyzed one-pot amination-annulation of α-cyanomethyl-β-ketoesters in water”, Demir, A. S.; Emrullahoğlu, M. Tetrahedron, 2006, 62, 1452.

4. “An effective new synthesis of 2-aminopyrrole-4-carboxylates”, Demir, A. S.; Emrullahoğlu, M. Tetrahedron, 2005, 61, 10482.

3. “Role of Copper Species in the Oxidative Dimerization of Arylboronic Acids: Synthesis of Symmetrical Biaryls”, Demir, A. S., Reis O., Emrullahoğlu, M. J. Org. Chem, 2003, 68, 10130.

2. “Generation of Aryl Radicals from Arylboronic Acids by Manganese(III) Acetate: Synthesis of Biaryls and Heterobiaryls”, Demir, A. S., Reis O., Emrullahoğlu, M. J. Org. Chem, 2003, 68, 578.

1. “Manganese(III) Acetate-mediated oxidative coupling of phenylhydrazines with furan and thiophene: a novel method for heterobiaryl coupling”, Demir, A. S., Reis O., Emrullahoğlu, M. Tetrahedron, 2002, 58, 8055.